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Available PhD positions

PhD position 9: München – Targeting ATRX-deficient hepatoblastoma

Institute:Ludwig-Maximilians-Universität München
Supervisor:Prof. Dr. Roland Kappler
Co-Supervisors:Dr. Jarno Drost and Dr. Julia Schueler
Secondments:PMC (Netherlands) and Charles River (Germany)
Enrolment in Doctoral Program:Genomic and Molecular Medicine
PhD awarded by:Ludwig-Maximilians-Universität München

Objectives

Cancer cells overcome replicative senescence by up-regulating telomerase. However, some cancers maintain telomere length by the telomerase-independent alternative lengthening of telomeres (ALT) pathway, which is strongly associated with inactivating mutations in ATRX. We will investigate the role of inactivating ATRX mutations in hepatoblastoma and identify transcriptional signatures and drugs that could be used to treat ATRX-mutated patients. We will utilize CRISPR-Cas9 to functionally inactivate ATRX in hepatoblastoma cell lines and investigate ALT-associated hallmarks such as promyelocytic leukaemia nuclear bodies and telomere length heterogeneity, as well as tumour biological characteristics such as viability, cell cycle, apoptosis, migration and invasion. RNA sequencing of ALT-positive knockout cell lines will be used to identify drugs responsible for ATRX-dependent ALT. Predicted drugs will be tested in conditional reprogrammed 3D models for their efficacy.

Expected Results

We expect to identify genetic and small-molecule perturbations that target high-risk hepatoblastoma with inactivating mutations in ATRX.